- #CLC BIO GENOMICS WORKBENCH DOWNLOAD HOW TO#
- #CLC BIO GENOMICS WORKBENCH DOWNLOAD SOFTWARE#
- #CLC BIO GENOMICS WORKBENCH DOWNLOAD FREE#
CLC Bio describes the Genomics Server a bioinformatics solution built on a three-tier server architecture. “A key to our success is that our customers can mix data, and that will continue with new platforms,” he says.Įarly in 2010, the company released version 2.0 of the CLC Genomics Server, an enterprise platform for next-generation sequencing data analysis.
#CLC BIO GENOMICS WORKBENCH DOWNLOAD SOFTWARE#
This overlying strategy extends to software in development to handle the hundreds of thousands of reads generated by upcoming third-generation sequencers. Because different sequencing instruments offer different advantages, it makes sense to mix datasets into hybrid assemblies, Knudsen notes. Users of CLC Bio’s software are not locked into a single platform, but can use any or all HTS machines. “We had a head start in the market, making us a premiere solution provider.” When first launched, “no other companies were doing this,” says Knudsen. The CLC Genomics Workbench is a comprehensive package that analyzes and visualizes data from all major next-generation HTS platforms, such as SOLiD by Applied Biosystems, 454 GSflx by Roche, and Solexa by Illumina. “So there’s a critical demand for solutions that are really adept at handling and analyzing these huge amounts of data,” he says. In fact, the amount of genomic sequencing data increases 10-fold every 18 months.
Whereas first-generation sequencing machines typically generate 0.1 megabases of data per run, second-generation instruments can spew out up to 40,000 megabases in a single run, explains Knudsen. The CLC Genomics Workbench, released in 2008, analyzes data from second-generation HTS instruments. In 2007, the company switched its focus to the analysis of next-generation sequencing data. Right: comparing expression across samples and clustering differentially expressed genes in a heat map Working with RNA-Seq data in CLC Genomics Workbench: Left: mapping of reads showing evidence of expression of three splice variants for this gene. Although designed for first-generation sequence data, he believes that the software makes a good teaching tool for students in molecular biology.
#CLC BIO GENOMICS WORKBENCH DOWNLOAD HOW TO#
When first launched, the software was “a powerful and intuitive way to show people how to do bioinformatics,” says Thomas Knudsen. In the first year, 100,000 downloads occurred, and by 2008, the number of downloads passed one million.
#CLC BIO GENOMICS WORKBENCH DOWNLOAD FREE#
The Sequence Viewer software remains free and can be downloaded from the company’s website.
0 kommentar(er)
